Scaffold Ga0214921_10000015

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000015
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 356312
• Total Scaffold Genes: 464
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 323 (69.61%)
• Novel Protein Genes: 27
• Novel Protein Genes with Ribosome Binding Sites (RBS): 24 (88.89%)
• Associated Families: 27

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F001008	Metagenome / Metatranscriptome	807	Y
F002267	Metagenome / Metatranscriptome	576	Y
F002869	Metagenome / Metatranscriptome	524	Y
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F003826	Metagenome / Metatranscriptome	466	Y
F005563	Metagenome / Metatranscriptome	396	Y
F006141	Metagenome / Metatranscriptome	380	Y
F006506	Metagenome / Metatranscriptome	371	Y
F009749	Metagenome / Metatranscriptome	313	Y
F010472	Metagenome	303	Y
F012023	Metagenome / Metatranscriptome	284	Y
F013757	Metagenome / Metatranscriptome	268	Y
F018716	Metagenome / Metatranscriptome	233	Y
F018911	Metagenome / Metatranscriptome	232	Y
F019762	Metagenome / Metatranscriptome	228	Y
F020170	Metagenome / Metatranscriptome	225	Y
F024559	Metagenome / Metatranscriptome	205	Y
F034176	Metagenome / Metatranscriptome	175	Y
F035629	Metagenome / Metatranscriptome	171	Y
F041019	Metagenome / Metatranscriptome	160	Y
F043407	Metagenome / Metatranscriptome	156	Y
F044497	Metagenome / Metatranscriptome	154	Y
F048089	Metagenome / Metatranscriptome	148	Y
F073563	Metagenome / Metatranscriptome	120	Y
F093773	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000001511	F000354	GGAG	MAKTNYDNFASFDLNEACDHFDCTDQKAWKKIRPFIVADGEEYAEVMEKEFDFEEVTDTDHMVFEAGVKYALTKMNIALDKAGIDVQVCEVDLVESMGFMMVRCDDEPEDFVKRVLKKPVMMVDSWV
Ga0214921_10000015131	F002977	GGAG	MKIQVPAEGIMKTNDWGDSKVYRIACNCHDENHNHNMWVEADDCDIVVTIYTTGKTNYWSKTRWYHIWTLLTKGYIDTESSVHLSKQQALNYAETLKSAITDVEEFQNARRNKEERATIAKMAKEQDCV
Ga0214921_10000015133	F073563	GAGG	MNPKYLYTIKWTQPYATYQMRPYLRHLREEYEIQIEARLDRGEFADAKKVIERIMSL
Ga0214921_10000015134	F003080	AGGAG	MTTAQDLTNQLIHRAKNLKEFVVERDFNSIPGGIVRFNIQHTIGQPARLFVPALTQAEAEEMVDEWFEEDVE
Ga0214921_10000015137	F018716	GGCGG	VITENTVSVVWDNQNGFWWNETCAIVLEVFGLPGERYSTHPKHDAMFFNFKNEKDADLCRILLSERL
Ga0214921_10000015141	F024559	GGAGG	MTSAFIKLILGIALIVIVVVFGPIVGIWSLNTLFPVLQIPLTVETWCAFFLLFGSITGLRIGTNK
Ga0214921_10000015143	F019762	AGGAG	MKELHESVAHTAKKITVRENAGSRVRLEKHEVLAPKGLFSLDIIQESLDEDGLVRDSQTYNFFMTKEELQSLANGLTA
Ga0214921_10000015144	F043407	GGA	MTTTLKNVVSNGLVGSTVSVGYGAIPPATPLTVGTVYPAGGVSGQIYTTTGTGAHPHWITPDVLVAKNNPPELEVKGRMVINGRDLEERLNTIEKVLQIPERDVILEKKHPKLKKLYDEYITALGKYRTFESIKGDE
Ga0214921_10000015149	F005563	GGA	MIDYYEALKEMNTGKVVKYVGTVNGNVWSDNGASFCMCRGCVFLFDAGVIKWNKLGYMVYDPDFRYELTGETVDPRAWKPEKNRDRKEIKSKLGYSRVGLGNI
Ga0214921_10000015205	F002267	AGGA	MTGVTALMTSYGTSLPTLVYDLDAANYSAVPTTGSTVAGAGAHTITVANAGSSITWQSSNGGVFRKSNNVGTDVIYGGPDYVTGQSYTVFMAYKRIATADGRLLNTQSEASKDWLMGLYNGHDQTFYPNFAVNLPSSGADLFWHLDWATWNTSTGLGQLYSATSSSPTGTSFTGTNAGGGGFNQLRLFSRSSGSEVQTADIGFIKVYNGVLTLANVQSLYTTYRTRFGYP
Ga0214921_10000015235	F006141	AGGA	MILEVFLYGFITAFGWWSANHYVIEPYFPPPIEKVESKNKEKQKEN
Ga0214921_10000015251	F009749	AGGCGG	MTYSWILIIAMYSPAGDFMGKNTVGFNSQKDCEAVKIQLTNLDHPMKVRHKGLCVTREHWEGKKQMPGVAYD
Ga0214921_1000001530	F035629	AGGA	MSEKIELKEKLAAVDMNFRTLWDEMDAEQRKALKNEYFILNRYISNVQSSKRDVQEHFVLTVNEYFNKNWNVLQKHPKLLWLLLCMCSYDKSTVFFHQWLGNKKKEGSSKKSKFLEELYPNKKLDEIEIMAKLSTDKELKDLARRHGYDEATIAKKIK
Ga0214921_10000015304	F018911	N/A	MIDYITTFFAIFLLDIVYTYYLRCIQYEQVLKASGWSVACYILGSVAVINYTTNHWLIIPAMAGAFCGTYVGMKIRKKQFGV
Ga0214921_10000015307	F048089	N/A	MKPNKTFKLSKTTKRMIGLMKGATADQRNQYKRMMIDAQLCSEIVIKTPTRDKNALRGNGPTGYQTNDTGTASTSTT
Ga0214921_10000015333	F012023	AGGAG	MDQIDYEKLNERIVEQAYETAFGDTLTKEQLQKLIQDKFERARVYHEALVKAPTFSVN
Ga0214921_10000015340	F003826	AGGAG	VDPITIGLAFTAAQTAVSHIKQAIALGKDINSLAGQFGKFFESSDAIHRERSKIKAKASRLGKTDAELGHEALQIAMHSDALRQAERELKDMILWQLGKPQIWEQMIQERTRLFKERAEAEQAEAERQLAHKKKMADMFIFAMYFIAGSVILFALAMGGVAIYGAAEEKRIYEQKVAARNALVRQQQKEREAREKKERDDYAKN
Ga0214921_10000015341	F044497	GGA	MLEWILALALAKEPDVKKWPEWECVRWTWSGDVYNRRVVCLEWRKRENRWIP
Ga0214921_10000015345	F041019	GAG	MIDGVKSATTALKTAQSAGKELGAVVSSQQADIEAIVQRDHKARITAKLAEEQRKSTLEYRALEKFESKIKYEQDVARLKAETIRKHGKDAWIKVEAEKALMEKERQAEMSAMDHDRQKQVDLLCWCFTAGALITYFFKLYKL
Ga0214921_10000015406	F010472	GGAG	MSVLAELMNSGHPWAAERAQYALQVHEAVGAGQLSPSEAKEILQDLISTEKLEEGAADQQATAALVFGVTQLISLY
Ga0214921_10000015407	F006506	GGA	MKKLITIIAFLSLTGCAGIMEKIPSRWDVNQAKVITDIQVQVNHFDCKGDQAAQLNALSLNVEWFDIYAKTKPTRDISKLTSTLTTTVKEYQDRLKTGPVSPLYCDLKVKIIKQQTEILTGSVQGRF
Ga0214921_10000015433	F002869	GGA	MTNEITVDMLDHTIVWCEQNAFWGKGSAIQRMQDFYFEKTRASVTEDWPESFTLQELADTLGIEQVRYRIYYSEDNLTLRLFVFRPHCVWDEQKIMLDLGFVVAQEGDADNIPNKPVEAVEQ
Ga0214921_10000015438	F034176	AGGTGG	MKYNYGYSNNVKHNDSAGDLEYFISKFDCRIEDSREYNQYRRQAPAYHRDFYDTDSFKMETEILPMKAIHLTSTNLARLVAEQEHMQQLGADAEYGKKCWADERKDRMVRDENPAVAKAYRNYQMLLELARK
Ga0214921_10000015443	F001008	N/A	MSKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKSDSNPDGYWLHPEDVGLNVQTIAALDLIISHFVVTEDEHE
Ga0214921_10000015459	F093773	AGGAG	MYDIVKNPIPRSGLFATPTLDQIANQIDGFPAETKAQLYLVMQLTLNACHKIVEDEILSKEVFAQ
Ga0214921_10000015464	F013757	GAG	LVLLRYNTYTQTQKEPKMLTNCIAKAKLVFNKNLKTYKLVVAFNAHKTIKPNGQVKYAFPTQAKCAYVSGDLLAENLQAELTKVLPTVYSTLRTNSVEFVE
Ga0214921_1000001593	F020170	AGAAG	MSKRVPPLDYQDEETHERLMEAFRQYFKANQNWINKGTRRAGENMRYWLAQIRIIARERREKVQQYRVHLDETKAQKKGDTAE